To make new modifications in the cdmsbats code, we copied the repository to /home/spa-u-cdmssoft folder and run it as the spa-u-cdmssoft user. New cdmsbats folder is named “cdms_bats_umn”. Procedure to include a new channel mapping is outline below.

Login as the cdmssoft user

sudo -u spa-u-cdmssoft -i

Load the cdmsbats environment variables

source cdmsbats_setup.sh

Goto the channel mapping file to edit

cd cdms_bats_umn/BatCommon/datareader
nano RawDataReader.cxx

After making the necessary changes, save it and then use make commands to recompile cdmsbats

cd cdms_bats_umn/BatCommon
make clean
make

Similarly do the same inside BatRoot and BatNoise to recompile the executables. The rq files are in /home/spa-u-cdmssoft/rq directory and noisefiles in /home/spa-u-cdmssoft/noisefiles

To run CDMSBATS, use the following version of CDMSBATS in the cdms2 server

/data/chocula/neog/cdmsbats

A sample setup script is available at

/data/chocula/neog/mydataproc/cdmsbats_setup.sh

In the folder, /data/chocula/neog/mydataproc the file proc_config.py contains the steps from raw to processed dataset.

To configure for a new run/dataset, use one of the old config files from

/data/chocula/neog/cdmsbats/UserSettings/BatRootSettings/analysis

and make a copy of it. Edit the file and use it for analysis configurations

To make processing configurations,copy and edit one of the files in

/data/chocula/neog/cdmsbats/UserSettings/BatRootSettings/processing

The processed data is stored in

 /data/chocula/neog/rq
 

Sample code execution:

python3 proc_config.py --series 07240208_1548